apl. Prof. Dr. Harald Köstler

2024

• Chincholi F., Köstler H.:
  Transforming glaucoma diagnosis: transformers at the forefront
  In: Frontiers in Artificial Intelligence 7 (2024), Article No.: 1324109
  ISSN: 2624-8212
  DOI: 10.3389/frai.2024.1324109

2023

• Alt C., Kenter T., Faghih-Naini S., Faj J., Opdenhövel JO., Plessl C., Aizinger V., Hönig J., Köstler H.:
  Shallow Water DG Simulations on FPGAs: Design and Comparison of a Novel Code Generation Pipeline
  High Performance Computing 38th International Conference, ISC High Performance 2023 (Hamburg, 21. May 2023 - 25. May 2023)
  In: High Performance Computing. ISC High Performance 2023, Cham: 2023
  DOI: 10.1007/978-3-031-32041-5_5
• Angersbach R., Kuckuk S., Köstler H.:
  Generating Coupling Interfaces for Multiphysics Simulations with ExaStencils and waLBerla
  International Parallel and Distributed Processing Symposium (IPDPS) (St. Petersburg, Florida USA, 15. May 2023 - 19. May 2023)
  In: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Los Alamitos, CA, USA: 2023
  DOI: 10.1109/IPDPSW59300.2023.00112
  URL: https://ieeexplore.ieee.org/document/10196550
• Chincholi F., Köstler H.:
  Detectron2 for Lesion Detection in Diabetic Retinopathy
  In: Algorithms 16 (2023), Article No.: 147
  ISSN: 1999-4893
  DOI: 10.3390/a16030147
• Dahmardeh M., Mirzaalian Dastjerdi H., Mazal H., Köstler H., Sandoghdar V.:
  Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa
  In: Nature methods (2023)
  ISSN: 1548-7105
  DOI: 10.1038/s41592-023-01778-2
• Faghih-Naini S., Kuckuk S., Zint D., Kemmler S., Köstler H., Aizinger V.:
  Discontinuous Galerkin method for the shallow water equations on complex domains using masked block-structured grids
  In: Advances in Water Resources 182 (2023), Article No.: 104584
  ISSN: 0309-1708
  DOI: 10.1016/j.advwatres.2023.104584
• Kemmler S., Köstler H.:
  Walberla: a Multi-Physics Open-Source Software Framework for Scalable and Efficient CFD
  SIAM Conference on Computational Science and Engineering (Amsterdam, 26. February 2023 - 3. March 2023)
• Kemmler S., Schwarzmeier C., Rettinger C., Plewinski J., Núñez-González F., Köstler H., Rüde U., Vowinckel B.:
  Geometrically Resolved Simulation of Upstream Migrating Antidune Formation and Propagation
  40th IAHR World Congres (Wien, 21. August 2023 - 25. August 2023)
• Parthasarathy D., Schmitt J., Köstler H.:
  Evolving Nonlinear Multigrid Methods With Grammar-Guided Genetic Programming
  2023 Genetic and Evolutionary Computation Conference Companion, GECCO 2023 Companion (Lisbon, PRT, 15. July 2023 - 19. July 2023)
  In: GECCO 2023 Companion - Proceedings of the 2023 Genetic and Evolutionary Computation Conference Companion 2023
  DOI: 10.1145/3583133.3590734
• Ravedutti Lucio Machado R., Eitzinger J., Köstler H., Wellein G.:
  MD-Bench: A Generic Proxy-App Toolbox for State-of-the-Art Molecular Dynamics Algorithms
  In: Parallel Processing and Applied Mathematics. PPAM 2022., Springer, Cham, 2023, p. 321-332 (Lecture Notes in Computer Science (LNCS), Vol.13826)
  ISBN: 978-3-031-30441-5
  DOI: 10.1007/978-3-031-30442-2_24
• Ravedutti Lucio Machado R., Eitzinger J., Laukemann J., Hager G., Köstler H., Wellein G.:
  MD-Bench: A performance-focused prototyping harness for state-of-the-art short-range molecular dynamics algorithms
  In: Future Generation Computer Systems-The International Journal of Grid Computing Theory Methods and Applications 149 (2023), p. 25-38
  ISSN: 0167-739X
  DOI: 10.1016/j.future.2023.06.023
• Ravedutti Lucio Machado R., Eitzinger J., Laukemann J., Hager G., Köstler H., Wellein G.:
  MD-Bench: A performance-focused prototyping harness for state-of-the-art short-range molecular dynamics algorithms
  In: Future Generation Computer Systems-The International Journal of Grid Computing Theory Methods and Applications (2023)
  ISSN: 0167-739X
  DOI: 10.1016/j.future.2023.06.023
• Schwarzmeier C., Rettinger C., Kemmler S., Plewinski J., Núñez-González F., Köstler H., Rüde U., Vowinckel B.:
  Particle-resolved simulation of antidunes in free-surface flows
  In: Journal of Fluid Mechanics 961 (2023), p. R1
  ISSN: 0022-1120
  DOI: 10.1017/jfm.2023.262
• Schwarzmeier C., Rettinger C., Kemmler S., Plewinski J., Núñez-González F., Köstler H., Rüde U., Vowinckel B.:
  Particle-resolved simulations of antidune migration in supercritical flows
  EGU General Assembly (Wien, 23. April 2023 - 28. April 2023)
  URL: https://www10.cs.fau.de/publications/posters/2023/Kemmler_EGU_2023.pdf

2022

• Alt C., Opdenhövel JO., Plessl C., Kenter T., Hönig J., Köstler H.:
  Bringing Water to the Fields - A Code Generation Pipeline for SWE Simulations on FPGAs
  ISC High Performance 2022 (Hamburg, 30. May 2022 - 1. June 2022)
• Angersbach R., Köstler H., Kuckuk S.:
  Fusion of Massively-Parallel Simulation Frameworks and Code Generation Methodologies for Lattice Boltzmann and Multigrid Applications
  Platform for Advanced Scientific Computing (PASC) Conference (Congress Center Basel, Switzerland., 27. June 2022 - 29. June 2022)
  URL: https://pasc22.pasc-conference.org/fileadmin/user_upload/pasc22/pdf/P41_pos144s2-file1.pdf
• Heisig M., Köstler H.:
  Closing the Performance Gap Between Lisp and C
  The 15th European Lisp Symposium (Porto, 21. March 2022 - 22. March 2022)
  In: Proceedings of The 15th European Lisp Symposium 2022
  DOI: 10.5281/zenodo.6335627
• Jacob S., Mrosek M., Othmer C., Köstler H.:
  Deep Learning for Real-Time Aerodynamic Evaluations of Arbitrary Vehicle Shapes
  In: SAE International Journal of Passenger Vehicle Systems 15 (2022), p. 77-90
  ISSN: 2770-3460
  DOI: 10.4271/15-15-02-0006
• Maier A., Köstler H., Heisig M., Krauss P., Yang SH.:
  Known operator learning and hybrid machine learning in medical imaging - A review of the past, the present, and the future
  In: Progress in Biomedical Engineering 4 (2022), Article No.: 022002
  ISSN: 2516-1091
  DOI: 10.1088/2516-1091/ac5b13
• Mirzaalian Dastjerdi H., Dahmardeh M., Gemeinhardt A., Mahmoodabadi RG., Köstler H., Sandoghdar V.:
  Optimized analysis for sensitive detection and analysis of single proteins via interferometric scattering microscopy
  In: Journal of Physics D: Applied Physics 55 (2022)
  ISSN: 0022-3727
  DOI: 10.1088/1361-6463/ac2f68
• Schmitt J., Köstler H.:
  Evolving Generalizable Multigrid-Based Helmholtz Preconditioners with Grammar-Guided Genetic Programming
  Genetic and Evolutionary Computation Conference (GECCO ’22) (Boston, Massachusetts, 9. July 2022 - 13. July 2022)
  In: Association for Computing Machinery (ed.): Proceedings of the Genetic and Evolutionary Computation Conference 2022
  DOI: 10.1145/3512290.3528688
• Zint D., Grosso R., Aizinger V., Faghih-Naini S., Kuckuk S., Köstler H.:
  Automatic Generation of Load-Balancing-Aware Block-Structured Grids for Complex Ocean Domains.
  2022 SIAM International Meshing Roundtable
  In: Robinson, Trevor ; Moxey, David ; Tomov, Vladimir Z. (ed.) (ed.): Proceedings of the 2022 SIAM International Meshing Roundtable 2022
  DOI: 10.5281/zenodo.6562440

2021

• Bauer M., Köstler H., Rüde U.:
  lbmpy: Automatic code generation for efficient parallel lattice Boltzmann methods
  In: Journal of Computational Science 49 (2021), Article No.: 101269
  ISSN: 1877-7503
  DOI: 10.1016/j.jocs.2020.101269
• Fontana de Nardin I., da Rosa Righi R., Lima Lopes TR., André da Costa C., Yeom HY., Köstler H.:
  On revisiting energy and performance in microservices applications: A cloud elasticity-driven approach
  In: Parallel Computing 108 (2021), Article No.: 102858
  ISSN: 0167-8191
  DOI: 10.1016/j.parco.2021.102858
• Holzer M., Bauer M., Köstler H., Rüde U.:
  Highly efficient lattice Boltzmann multiphase simulations of immiscible fluids at high-density ratios on CPUs and GPUs through code generation
  In: International Journal of High Performance Computing Applications (2021)
  ISSN: 1094-3420
  DOI: 10.1177/10943420211016525
• Ravedutti Lucio Machado R., Schmitt J., Eibl S., Eitzinger J., Leißa R., Hack S., Pérard-Gayot A., Membarth R., Köstler H.:
  tinyMD: Mapping molecular dynamics simulations to heterogeneous hardware using partial evaluation
  In: Journal of Computational Science 54 (2021), Article No.: 101425
  ISSN: 1877-7503
  DOI: 10.1016/j.jocs.2021.101425
• Schmitt J., Kuckuk S., Köstler H.:
  EvoStencils: a grammar-based genetic programming approach for constructing efficient geometric multigrid methods
  In: Genetic Programming and Evolvable Machines (2021)
  ISSN: 1389-2576
  DOI: 10.1007/s10710-021-09412-w
  URL: http://link.springer.com/article/10.1007/s10710-021-09412-w
• Sobania D., Schmitt J., Köstler H., Rothlauf F.:
  Genetic programming for iterative numerical methods
  In: Genetic Programming and Evolvable Machines (2021)
  ISSN: 1389-2576
  DOI: 10.1007/s10710-021-09425-5

2020

• Bauer M., Eibl S., Godenschwager C., Kohl N., Kuron M., Rettinger C., Schornbaum F., Schwarzmeier C., Thönnes D., Köstler H., Rüde U.:
  WALBERLA: A block-structured high-performance framework for multiphysics simulations
  In: Computers & Mathematics with Applications (2020)
  ISSN: 0898-1221
  DOI: 10.1016/j.camwa.2020.01.007
• Faghih-Naini S., Kuckuk S., Aizinger V., Zint D., Grosso R., Köstler H.:
  Quadrature-free discontinuous Galerkin method with code generation features for shallow water equations on automatically generated block-structured meshes
  In: Advances in Water Resources 138 (2020), Article No.: 103552
  ISSN: 0309-1708
  DOI: 10.1016/j.advwatres.2020.103552
• Hönig J., Koch M., Rüde U., Engwer C., Köstler H.:
  Unified generation of DG-kernels for different HPC frameworks
  In: Ian Foster, Gerhard R. Joubert, Ludek Kucera, Wolfgang E. Nagel, Frans Peters (ed.): Advances in Parallel Computing 2020
  DOI: 10.3233/APC200062
• Hönig J., Köstler H., Rüde U., Engwer C., Koch M.:
  Unified Generation of DG-Kernels for Different HPC Frameworks
  In: IOS Press (ed.): Parallel Computing Technology Trends, 2020 (Advances in parallel computing, Vol.36)
• Köstler H., Heisig M., Kohl N., Kuckuk S., Bauer M., Rüde U.:
  Code generation approaches for parallel geometric multigrid solvers
  In: Analele Stiintifice ale Universitatii Ovidius Constanta, Seria Matematica 28 (2020), p. 123-152
  ISSN: 1844-0835
  DOI: 10.2478/auom-2020-0038
• Lengauer C., Apel S., Bolten M., Chiba S., Rüde U., Teich J., Größlinger A., Hannig F., Köstler H., Claus L., Grebhahn A., Groth S., Kronawitter S., Kuckuk S., Rittich H., Schmitt C., Schmitt J.:
  ExaStencils: Advanced multigrid solver generation
  In: Hans-Joachim Bungartz, Severin Reiz, Benjamin Uekermann, Philipp Neumann, Wolfgang E. Nagel (ed.): Lecture notes in computational science and engineering, Cham: Springer, 2020, p. 405-452 (Software for Exascale Computing SPPEXA 2016 – 2019, Vol.136)
  ISBN: 978-3-030-47955-8
  DOI: 10.1007/978-3-030-47956-5
  URL: https://library.oapen.org/bitstream/handle/20.500.12657/41289/2020_Book_SoftwareForExascaleComputing-S.pdf?sequence=1#page=411
• Lengauer C., Apel S., Bolten M., Chiba S., Rüde U., Teich J., Größlinger A., Hannig F., Köstler H., Claus L., Grebhahn A., Groth S., Kronawitter S., Kuckuk S., Rittich H., Schmitt C., Schmitt J.:
  ExaStencils – Advanced Multigrid Solver Generation
  In: Hans-Joachim Bungartz, Severin Reiz, Philipp Neumann, Benjamin Uekermann, Wolfgang Nagel (ed.): Software for Exascale Computing – SPPEXA 2016-2019, Springer, 2020, p. 405-452 (Lecture Notes in Computer Science and Engineering, Vol.136)
  ISBN: 978-3-030-47955-8
  DOI: 10.1007/978-3-030-47956-5_14
  URL: https://www12.cs.fau.de/downloads/hannig/publications/ExaStencils_Advanced_Multigrid_Solver_Generation.pdf
• Schmitt J., Kuckuk S., Köstler H.:
  Constructing Efficient Multigrid Solvers with Genetic Programming
  Genetic and Evolutionary Computation Conference (GECCO '20) (Cancún, 8. July 2020 - 12. July 2020)
  In: Association for Computing Machinery (ed.): Proceedings of the 2020 Genetic and Evolutionary Computation Conference, New York, NY, USA: 2020
  DOI: 10.1145/3377930.3389811

2019

• Bauer M., Hötzer J., Ernst D., Hammer J., Seiz M., Hierl H., Hönig J., Köstler H., Wellein G., Nestler B., Rüde U.:
  Code generation for massively parallel phase-field simulations
  2019 International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019 (Denver, CO, 17. November 2019 - 22. November 2019)
  In: International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019
  DOI: 10.1145/3295500.3356186
• Nicoli F., König K., Dahmardeh M., Gemeinhardt A., Mahmoodabadi RG., Mirzaalian Dastjerdi H., Köstler H., Sandoghdar V.:
  Opportunities and challenges of single protein detection with iSCAT
  2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019 (Munich, 23. June 2019 - 27. June 2019)
  In: 2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2019 2019
  DOI: 10.1109/CLEOE-EQEC.2019.8872414
• Schmitt J., Kuckuk S., Köstler H.:
  Towards the automatic optimization of geometric multigrid methods with evolutionary computation
  19th Copper Mountain Conference On Multigrid Methods (Copper Mountain, Colorado, 24. March 2019 - 28. March 2019)
  DOI: 10.29007/1c29
  URL: https://easychair.org/smart-slide/slide/7g69
• Zint D., Grosso R., Aizinger V., Köstler H.:
  Generation of Block Structured Grids on Complex Domains for High Performance Simulation
  In: Computational Mathematics and Mathematical Physics 59 (2019), p. 2108-2123
  ISSN: 0965-5425
  DOI: 10.1134/S0965542519120182
• Zint D., Grosso R., Aizinger V., Köstler H.:
  Generation of Block Structured Grids on Complex Domains for High Performance Simulation
  9th International Conference of Numerical Geometry, Grid Generation and Scientific Computing (Dorodnicyn Computing Center, Moscow, 3. December 2018 - 5. December 2018)
  In: Springer International Publishing, Cham (ed.): Numerical Geometry, Grid Generation and Scientific Computing, Cham: 2019
  DOI: 10.1007/978-3-030-23436-2_6

2018

• Heisig M., Köstler H.:
  Petalisp: Run Time Code Generation for Operations on Strided Arrays
  ARRAY 2018 (Philadelphia, PA, USA, 19. June 2018 - 19. June 2018)
  In: ACM (ed.): Proceedings of the 5th ACM SIGPLAN International Workshop on Libraries, Languages, and Compilers for Array Programming 2018
  DOI: 10.1145/3219753.3219755
• Kohl N., Hötzer J., Schornbaum F., Bauer M., Godenschwager C., Köstler H., Nestler B., Rüde U.:
  A scalable and extensible checkpointing scheme for massively parallel simulations
  In: International Journal of High Performance Computing Applications (2018)
  ISSN: 1094-3420
  DOI: 10.1177/1094342018767736
• Kuckuk S., Köstler H.:
  Code Generation for Massively Parallel PDE Solvers
  Computational Science at Scale (CoSaS) (Erlangen, 5. September 2018 - 7. September 2018)
• Kuckuk S., Köstler H.:
  Generation of Highly Parallel Multigrid Solvers for CFD Applications
  SIAM Conference on Parallel Processing for Scientific Computing 2018 (Tokio, 7. March 2018 - 10. March 2018)
• Kuckuk S., Köstler H.:
  Towards Whole Program Generation for Ocean Modeling
  PASC'18 (Basel, 2. July 2018 - 4. July 2018)
• Kuckuk S., Köstler H.:
  Whole Program Generation of Massively Parallel Shallow Water Equation Solvers
  2018 IEEE International Conference on Cluster Computing (CLUSTER) (Belfast, 10. September 2018 - 13. September 2018)
  In: 2018 IEEE International Conference on Cluster Computing (CLUSTER) 2018
  DOI: 10.1109/CLUSTER.2018.00020
  URL: https://ieeexplore.ieee.org/document/8514861
• Pollinger T., Kohlhase M., Köstler H.:
  Knowledge amalgamation for computational science and engineering
  11th International Conference on Intelligent Computer Mathematics, CICM 2018
  DOI: 10.1007/978-3-319-96812-4_20
• Schmitt C., Schmid M., Kuckuk S., Köstler H., Teich J., Hannig F.:
  Reconfigurable Hardware Generation of Multigrid Solvers with Conjugate Gradient Coarse-Grid Solution
  In: Parallel Processing Letters 28 (2018), Article No.: 1850016
  ISSN: 0129-6264
  DOI: 10.1142/S0129626418500160
• Schmitt J., Köstler H., Eitzinger J., Membarth R.:
  Unified Code Generation for the Parallel Computation of Pairwise Interactions using Partial Evaluation
  17th International Symposium on Parallel and Distributed Computing (ISPDC) (Geneva, 25. June 2018 - 28. June 2018)
  In: IEEE (ed.): Proceedings of the 17th International Symposium on Parallel and Distributed Computing (ISPDC) 2018
  DOI: 10.1109/ISPDC2018.2018.00012
  URL: https://ieeexplore.ieee.org/document/8452015/
• Schmitt J., Köstler H., Eitzinger J., Membarth R., Pérard-Gayot A.:
  Unified Code Generation for the Parallel Computation of Pairwise Interactions using Partial Evaluation
  International Symposium on Computational Science at Scale (CoSaS) (Erlangen, 5. September 2018 - 7. September 2018)
  DOI: 10.1109/ispdc2018.2018.00012
  URL: https://graphics.cg.uni-saarland.de/papers/schmitt-2018-cosas-poster.pdf
• Wittmann M., Haag V., Zeiser T., Köstler H., Wellein G.:
  Lattice Boltzmann benchmark kernels as a testbed for performance analysis
  In: Computers & Fluids 172 (2018), p. 582-592
  ISSN: 0045-7930
  DOI: 10.1016/j.compfluid.2018.03.030

2017

• Kuckuk S., Haase G., Vasco DA., Köstler H.:
  Towards Generating Efficient Flow Solvers with the ExaStencils Approach
  In: Concurrency and Computation-Practice & Experience 29 (2017), p. 4062:1-4062:17
  ISSN: 1532-0626
  DOI: 10.1002/cpe.4062
  URL: https://onlinelibrary.wiley.com/doi/abs/10.1002/cpe.4062
• Kuckuk S., Köstler H.:
  Metaprogramming for Unstructured Mesh Applications in Ocean Modeling
  SIAM Conference on Computational Science and Engineering 2017 (Atlanta, 27. February 2017 - 3. March 2017)
• Kuckuk S., Köstler H.:
  Whole Program Generation for Complex Fluid Flow Solvers
  PASC'17 (Lugano, 26. June 2017 - 28. February 2017)
• Kuckuk S., Leitenmaier L., Schmitt C., Schönwetter D., Köstler H., Fey D.:
  Towards Virtual Hardware Prototyping for Generated Geometric Multigrid Solvers
  CS 2017-01 (2017), p. 1-8
  ISSN: 2191-5008
  Open Access: http://nbn-resolving.de/urn:nbn:de:bvb:29-opus4-83179
  URL: http://nbn-resolving.de/urn:nbn:de:bvb:29-opus4-83179
  (Techreport)
• Köstler H., Schmitt C., Kuckuk S., Kronawitter S., Hannig F., Teich J., Rüde U., Lengauer C.:
  A Scala Prototype to Generate Multigrid Solver Implementations for Different Problems and Target Multi-Core Platforms
  In: International Journal of Computational Science and Engineering 14 (2017), p. 150-163
  ISSN: 1742-7185
  DOI: 10.1504/IJCSE.2017.10003829
• Pickl K., Pande J., Köstler H., Rüde U., Smith AS.:
  Lattice Boltzmann simulations of the bead-spring microswimmer with a responsive stroke-from an individual to swarms
  In: Journal of Physics: Condensed Matter 29 (2017), Article No.: 124001
  ISSN: 0953-8984
  DOI: 10.1088/1361-648X/aa5a40
  URL: http://iopscience.iop.org/article/10.1088/1361-648X/aa5a40

2016

• Bauer M., Schornbaum F., Godenschwager C., Hötzer J., Köstler H., Rüde U.:
  Performance Optimization of a Massively Parallel Phase-Field Method Using the HPC Framework waLBerla
  SIAM Conference on Parallel Processing 2016 (SIAM-PP16) (Paris, 12. April 2016 - 15. April 2016)
  Open Access: https://www10.cs.fau.de/publications/talks/2016/Bauer_Paris_SIAM-PP_2016-04-13.pdf
  URL: https://www10.cs.fau.de/publications/talks/2016/Bauer_Paris_SIAM-PP_2016-04-13.pdf
• Bauer M., Schornbaum F., Godenschwager C., Markl M., Anderl D., Köstler H., Rüde U.:
  A Python extension for the massively parallel multiphysics simulation framework waLBerla
  In: International Journal of Parallel, Emergent and Distributed Systems 31 (2016), p. 529-542
  ISSN: 1744-5760
  DOI: 10.1080/17445760.2015.1118478
  URL: https://www.tandfonline.com/doi/abs/10.1080/17445760.2015.1118478
• Hoetzer J., Steinmetz P., Jainta M., Schulz S., Kellner M., Nestler B., Genau A., Dennstedt A., Bauer M., Köstler H., Rüde U.:
  Phase-field simulations of spiral growth during directional ternary eutectic solidification
  In: Acta Materialia 106 (2016), p. 249-259
  ISSN: 1359-6454
  DOI: 10.1016/j.actamat.2015.12.052
  URL: http://www.sciencedirect.com/science/article/pii/S1359645415301580/pdfft?md5=45df4824879d9b1edb06733c7ad1e007πd=1-s2.0-S1359645415301580-main.pdf
• Kuckuk S., Köstler H.:
  Automatic Code Generation for Simulating Non-Newtonian Fluid Flows with ExaStencils
  SIAM Conference on Parallel Processing 2016 (Paris, 12. April 2016 - 15. April 2016)
• Kuckuk S., Köstler H.:
  Automatic Code Generation for Simulations of Non-Newtonian Fluids
  PASC'16 (Lausanne, 8. June 2016 - 10. June 2016)
• Kuckuk S., Köstler H.:
  Automatic Generation of Massively Parallel Codes from ExaSlang
  In: Computation 4 (2016), p. 1-20
  ISSN: 2079-3197
  Open Access: http://www.mdpi.com/2079-3197/4/3/27
  URL: http://www.mdpi.com/2079-3197/4/3/27/pdf
• Rühaak Jan, König Lars, Tramnitzke Florian, Köstler Harald, Modersitzki Jan:
  A matrix-free approach to efficient affine-linear image registration on CPU and GPU
  In: Journal of Real-Time Image Processing (2016), p. 1-21
  ISSN: 1861-8200
  DOI: 10.1007/s11554-016-0564-4
  URL: http://link.springer.com/article/10.1007/s11554-016-0564-4
• Pickl K., Köstler H., Pande J., Smith AS., Rüde U.:
  When do microswimmers exit the Stokes regime
  (2016), Article No.: 1603.04633
  Open Access: http://arxiv.org/pdf/1603.04633v1.pdf
  URL: http://arxiv.org/pdf/1603.04633v1.pdf
  (online publication)
• Schmitt C., Kuckuk S., Hannig F., Teich J., Köstler H., Rüde U., Lengauer C.:
  Systems of Partial Differential Equations in ExaSlang
  In: Software for Exascale Computing - SPPEXA 2013-2015, Berlin, Heidelberg, New York: Springer, 2016, p. 47-67 (Lecture Notes in Computational Science and Engineering, Vol.113)
  ISBN: 9783319405261
  DOI: 10.1007/978-3-319-40528-5_3
• Schmitt J., Köstler H.:
  A Multi-Objective Genetic Algorithm for Simulating Optimal Fights in StarCraft II
  IEEE Conference on Computational Intelligence and Games (CIG) (Santorini, 20. September 2016 - 23. September 2016)
  In: IEEE (ed.): 2016 IEEE Conference on Computational Intelligence and Games (CIG) 2016
  DOI: 10.1109/CIG.2016.7860422
  URL: https://ieeexplore.ieee.org/document/7860422/

2015

• Bauer M., Hötzer J., Jainta M., Steinmetz P., Berghoff M., Schornbaum F., Godenschwager C., Köstler H., Nestler B., Rüde U.:
  Massively Parallel Phase-field Simulations for Ternary Eutectic Directional Solidification
  International Conference for High Performance Computing, Networking, Storage and Analysis (Austin, 15. November 2015 - 20. November 2015)
  In: ACM (ed.): Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, New York: 2015
  DOI: 10.1145/2807591.2807662
  URL: http://dl.acm.org/ft_gateway.cfm?id=2807662&ftid=1632044&dwn=1&CFID=799807051&CFTOKEN=95903740
• Bauer M., Köstler H., Rüde U.:
  Massively Parallel Phase-Field Simulation using HPC Framework waLBerla
  SIAM Conference on Computational Science and Engineering (Salt Lake City, 14. March 2015 - 18. March 2015)
  URL: https://www10.cs.fau.de/publications/talks/2015/Bauer_SaltLakeCity_2015-03-15.pdf
• Bauer M., Pursiainen S., Vorwerk J., Köstler H., Wolters C.:
  Comparison Study for Whitney (Raviart-Thomas)-Type Source Models in Finite-Element-Methods-Based EEG Forward Modeling
  In: IEEE transactions on bio-medical engineering 62 (2015), p. 2648-2656
  ISSN: 1558-2531
  DOI: 10.1109/TBME.2015.2439282
  URL: http://www.sci.utah.edu/~wolters/PaperWolters/2015/BauerPursiainenVorwerkKoestlerWolters_IEEETransBiomedEng_2015.pdf
• Bauer M., Schornbaum F., Godenschwager C., Markl M., Anderl D., Rüde U., Köstler H.:
  A Python extension for the massively parallel multiphysics simulation framework waLBerla
  In: International Journal of Distributed and Parallel Systems (2015), p. 1-14
  ISSN: 2229-3957
  DOI: 10.1080/17445760.2015.1118478
  URL: http://www.tandfonline.com/doi/full/10.1080/17445760.2015.1118478
• Bleiler C., Wagner A., Stadelmann V., Windolf M., Köstler H., Bogner A., Gueorguiev-Rüegg B., Ehlers W., Röhrle O.:
  Multiphasic modelling of bone-cement injection into vertebral cancellous bone
  In: International Journal For Numerical Methods in Biomedical Engineering 31 (2015), p. e02696 1-21
  ISSN: 2040-7939
  DOI: 10.1002/cnm.2696
  URL: http://onlinelibrary.wiley.com/doi/10.1002/cnm.2696/epdf
• Feichtinger C., Habich J., Köstler H., Rüde U., Aoki T.:
  Performance Modeling and Analysis of Heterogeneous Lattice Boltzmann Simulations on CPU-GPU Clusters
  In: Parallel Computing 46 (2015), p. 1-13
  ISSN: 0167-8191
  DOI: 10.1016/j.parco.2014.12.003
  URL: http://www.sciencedirect.com/science/article/pii/S0167819114001446
• Gaffling S., Daum V., Steidl S., Maier A., Köstler H., Hornegger J.:
  A Gauss-Seidel Iteration Scheme for Reference-Free 3-D Histological Image Reconstruction
  In: IEEE Transactions on Medical Imaging 34/2015 (2015), p. 1-17
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2014.2361784
  URL: https://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2015/Gaffling15-AGI.pdf
• Gmeiner B., Köstler H., Stürmer M., Rüde U.:
  Parallel multigrid on hierarchical hybrid grids: a performance study on current high performance computing clusters (vol 26, pg 217, 2014)
  In: Concurrency and Computation-Practice & Experience 27 (2015), p. 2369-2369
  ISSN: 1532-0626
  DOI: 10.1002/cpe.3557
  URL: http://onlinelibrary.wiley.com/doi/10.1002/cpe.2968/pdf
• Hötzer J., Jainta M., Steinmetz P., Nestler B., Dennstedt A., Genau A., Bauer M., Köstler H., Rüde U.:
  Large scale phase-field simulations of directional ternary eutectic solidification
  In: Acta Materialia 93 (2015), p. 194-204
  ISSN: 1359-6454
  DOI: 10.1016/j.actamat.2015.03.051
  URL: http://www.sciencedirect.com/science/article/pii/S135964541500227X
• Kuschel C., Köstler H., Rüde U.:
  Multi-Energy Simulation of a Smart Grid with Optimal Local Demand and Supply Management
  In: Smart Grid and Renewable Energy 6 (2015), p. 305-315
  ISSN: 2151-481X
  DOI: 10.4236/sgre.2015.611025
  URL: http://file.scirp.org/pdf/SGRE_2015121813410527.pdf
• Tramnitzke F., Rühaak J., König L., Modersitzki J., Köstler Harald:
  GPU Based Affine Linear Image Registration using Normalized Gradient Fields
  Seventh International Workshop on High Performance Computing for Biomedical Image Analysis (HPC-MICCAI) (Boston)
  In: Proc. Seventh International Workshop on High Performance Computing for Biomedical Image Analysis (HPC-MICCAI) 2015
  URL: https://www.mic.uni-luebeck.de/uploads/tx_wapublications/tramnitzke2014gpu.pdf
• Reuter B., Aizinger V., Köstler H.:
  A multi-platform scaling study for an OpenMP parallelization of a discontinuous Galerkin ocean model
  In: Computers & Fluids 117 (2015), p. 325 - 335
  ISSN: 0045-7930
  DOI: 10.1016/j.compfluid.2015.05.020
  URL: https://www1.am.uni-erlangen.de/research/publications/Jahr_2015/2015_ReuterAizingerKoestler_MultiPlatformScalingOpenMPdGoceanModel.pdf
• Schmitt C., Schmid M., Hannig F., Teich J., Kuckuk S., Köstler H.:
  Generation of Multigrid-based Numerical Solvers for FPGA Accelerators
  2nd International Workshop on High-Performance Stencil Computations (HiStencils) (Amsterdam, 20. January 2015 - 20. January 2015)
  In: Proceedings of the 2nd International Workshop on High-Performance Stencil Computations (HiStencils) 2015
  URL: https://www12.cs.fau.de/downloads/schmittch/publications/SSHTKK15histencils.pdf
• Schmitt J., Seufert S., Zoubek C., Köstler H.:
  Potential-Field-Based Unit Behavior Optimization for Balancing in StarCraft II
  Genetic and Evolutionary Computation Conference (GECCO) (Madrid, 11. July 2015 - 15. July 2015)
  In: ACM (ed.): GECCO Companion '15 Proceedings of the Companion Publication of the 2015 Annual Conference on Genetic and Evolutionary Computation 2015
  DOI: 10.1145/2739482.2764643
  URL: https://dl.acm.org/citation.cfm?id=2764643
• Schönwetter D., Ditter A., Kleinert B., Hendricks A., Aizinger V., Köstler H., Fey D.:
  Tsunami and Storm Surge Simulation Using Low Power Architectures - Concept and Evaluation
  5th International Conference on Simulation and Modeling Methodologies, Technologies and Applications (Colmar, 21. July 2015 - 23. July 2015)
  In: Proceedings of the 5th International Conference on Simulation and Modeling Methodologies, Technologies and Applications, Colmar, Alsace, France: 2015
  DOI: 10.5220/0005566603770382

2014

• Bauer M., Schornbaum F., Godenschwager C., Markl M., Anderl D., Köstler H., Rüde U.:
  A Python extension for the massively parallel framework waLBerla
  4th Workshop on Python for High Performance and Scientific Computing (New Orleans, 17. November 2014 - 17. November 2014)
  In: online 2014
  URL: http://www.dlr.de/sc/Portaldata/15/Resources/dokumente/pyhpc2014/submissions/pyhpc2014_submission_5.pdf
• Bleiler C., Wagner A., Stadelmann V., Windolf M., Gueorguiev-Rüegg B., Köstler H., Boger A., Ehlers W., Röhrle O.:
  Multiphasic Modelling of the Vertebral Bone for Cement-Injection Studies
  In: Proceedings in Applied Mathematics and Mechanics 14 (2014), p. 117-118
  ISSN: 1617-7061
  URL: http://onlinelibrary.wiley.com/doi/10.1002/pamm.201410046/pdf
• Gmeiner B., Köstler H., Stürmer M., Rüde U.:
  Parallel multigrid on hierarchical hybrid grids: a performance Study on current high performance computing clusters
  In: Concurrency and Computation-Practice & Experience 26 (2014), p. 217-240
  ISSN: 1532-0626
  DOI: 10.1002/cpe.2968
  URL: http://onlinelibrary.wiley.com/doi/10.1002/cpe.2968/pdf
• Grebhahn A., Kuckuk S., Schmitt C., Köstler H., Siegmund N., Apel S., Hannig F., Teich J.:
  Experiments on Optimizing the Performance of Stencil Codes with SPL Conqueror
  In: Parallel Processing Letters 24 (2014)
  ISSN: 0129-6264
  DOI: 10.1142/S0129626414410011
• Grebhahn A., Siegmund N., Apel S., Kuckuk S., Schmitt C., Köstler H.:
  Optimizing Performance of Stencil Code with SPL Conqueror
  1st International Workshop on High-Performance Stencil Computations (HiStencils) (Vienna, 20. January 2014 - 20. January 2014)
  In: Proceedings of the 1st International Workshop on High-Performance Stencil Computations (HiStencils) 2014
  URL: https://www12.cs.fau.de/downloads/schmittch/publications/GSAKSK14histencils.pdf
• Kuckuk S., Gmeiner B., Köstler H., Rüde U.:
  A Generic Prototype to Benchmark Algorithms and Data Structures
  In: Parallel Computing: Accelerating Computational Science and Engineering (CSE), Berlin: IOS Press, 2014, p. 813-822 (Advances in Parallel Computing, Vol.25)
  ISBN: 978-1-61499-380-3
  DOI: 10.3233/978-1-61499-381-0-813
  URL: http://ebooks.iospress.nl/volumearticle/35957
• Kuckuk S., Schmitt C., Köstler H., Hannig F., Teich J.:
  Generating Highly Parallel Geometric Multigrid Solvers with the ExaStencils Apporach
  3rd Workshop on Extreme-scale Programming Tools (New Orleans, 17. November 2014 - 17. November 2014)
• Köstler H.:
  Platform-independent description of imaging algorithms
  In: Proceedings in Applied Mathematics and Mechanics 14 (2014), p. 945-946
  ISSN: 1617-7061
  URL: http://www.infosun.fim.uni-passau.de/publications/docs/Koestler2014pamm.pdf
• Köstler H., Feichtinger C., Rüde U., Aoki T.:
  A Geometric Multigrid Solver on Tsubame 2.0
  In: Bruhn A, Pock Th, Tai X-C (ed.): Efficient Algorithms for Global Optimisation Methods in Computer Vision, Berlin, Heidelberg, New York: Springer, 2014, p. 155-173 (Lecture Notes in Computer Science, Vol.8293)
  ISBN: 978-3-642-54774-4
  DOI: 10.1007/978-3-642-54774-4-8
  URL: http://link.springer.com/content/pdf/10.1007%2F978-3-642-54774-4_8.pdf
• Köstler H., Kuckuk S.:
  Automatic Generation of Algorithms and Data Structures for Geometric Multigrid
  SIAM Conference on Parallel Processing for Scientific Computing (Portland, 18. February 2014 - 21. February 2014)
• Köstler H., Rüde U.:
  waLBerla - A massively parallel framework for fluid simulations
  In: Wagner S, Bode A, Satzger H, Brehm M. (ed.): High Performance Computing in Science and Engineering Garching/Munich 2014, München: Bayerische Akademie der Wissenschaften, 2014, p. 142-143
  ISBN: 978-3-9816675-0-9
  Open Access: https://www.lrz.de/services/compute/supermuc/magazinesbooks/2014_SuperMUC-Results-Reports.pdf
  URL: http://www.lrz.de/services/compute/supermuc/magazinesbooks/2014_SuperMUC-Results-Reports.pdf
• Lengauer C., Apel S., Bolten M., Größlinger A., Hannig F., Köstler H., Rüde U., Teich J., Grebhahn A., Kronawitter S., Kuckuk S., Rittich H., Schmitt C.:
  ExaStencils: Advanced Stencil-Code Engineering - First Project Report
  (2014)
  Open Access: http://www.fim.uni-passau.de/fileadmin/files/forschung/mip-berichte/MIP1401.pdf
  (Techreport)
• Lengauer C., Apel S., Größlinger A., Grebhahn A., Kronawitter S., Bolten M., Rittich H., Hannig F., Köstler H., Rüde U., Teich J., Kuckuk S., Schmitt C.:
  ExaStencils: Advanced Stencil-Code Engineering
  Euro-Par: Parallel Processing Workshops (Porto, 25. August 2014 - 26. August 2014)
  In: Proceedings of Euro-Par 2014: Parallel Processing Workshops, Berlin; Heidelberg: 2014
  DOI: 10.1007/978-3-319-14313-2_47
  URL: http://link.springer.com/content/pdf/10.1007/978-3-319-14313-2_47.pdf
• Membarth R., Reiche O., Schmitt C., Hannig F., Teich J., Stürmer M., Köstler H.:
  Towards a Performance-portable Description of Geometric Multigrid Algorithms using a Domain-specific Language
  In: Journal of Parallel and Distributed Computing 74 (2014), p. 3191-3201
  ISSN: 0743-7315
  DOI: 10.1016/j.jpdc.2014.08.008
• Pickl K., Hofmann M., Preclik T., Köstler H., Smith AS., Rüde U.:
  Parallel Simulations of Self-propelled Microorganisms
  In: Bader M, Bode A, Bungartz H, Gerndt M, Joubert G, Peters F. (ed.): Parallel Computing: Accelerating Computational Science and Engineering (CSE), Clifton, Amsterdam, Tokyo: IOS Press, 2014, p. 395-404 (Advances in Parallel Computing, Vol.25)
  ISBN: 978-1-61499-381-0
  DOI: 10.3233/978-1-61499-381-0-395
  URL: http://www.ebooks.iospress.nl/volumearticle/35904
• Schmitt C., Kuckuk S., Hannig F., Köstler H., Teich J.:
  ExaSlang: A Domain-Specific Language for Highly Scalable Multigrid Solvers
  4th International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing (WOLFHPC) (New Orleans, LA, USA, 17. November 2014 - 17. November 2014)
  In: Proc. of the 4th International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing (WOLFHPC), New York, NY, USA: 2014
  DOI: 10.1109/WOLFHPC.2014.11
• Schmitt C., Kuckuk S., Köstler H., Hannig F., Teich J.:
  An Evaluation of Domain-Specific Language Technologies for Code Generation
  14th International Conference on Computational Science and its Applications (ICCSA) (Minho, Guimaraes, 30. June 2014 - 3. July 2014)
  In: Proc. of the 14th International Conference on Computational Science and its Applications (ICCSA), New York, NY, USA: 2014
  DOI: 10.1109/ICCSA.2014.16
• Stürmer M., Dagner J., Manstetten P., Köstler H.:
  Real-time simulation of temperature in hot rolling rolls
  In: Journal of Computational Science (2014)
  ISSN: 1877-7503
  DOI: 10.1016/j.jocs.2014.04.003
  URL: http://www.sciencedirect.com/science/article/pii/S1877750314000453

2013

• Gmeiner B., Köstler H., Rüde U.:
  Wie viel Unbekannte hat das größte Gleichungssystem, das man heute lösen kann?
  In: GAMM-Mitteilungen 1 (2013), p. 18-23
  ISSN: 0936-7195
  URL: http://www.gamm-ev.de/pdf_file/GAMM_1_2013_web.pdf
• Godenschwager C., Schornbaum F., Bauer M., Köstler H., Rüde U.:
  A Framework for Hybrid Parallel Flow Simulations with a Trillion Cells in Complex Geometries
  SC13: International Conference for High Performance Computing, Networking, Storage and Analysis (Denver, 17. November 2013 - 22. November 2013)
  In: Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis 2013
  DOI: 10.1145/2503210.2503273
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2013/Godenschwager_SC13.pdf
• Kuckuk S., Köstler H.:
  A Framework for Interactive Physical Simulations on Remote HPC Clusters
  CS-2013-06 (2013), p. 1-10
  ISSN: 2191-5008
  Open Access: https://opus4.kobv.de/opus4-fau/frontdoor/index/index/docId/5024
  URL: http://opus4.kobv.de/opus4-fau/files/5024/Kuckuk_2013_VIPER.pdf
  (Techreport)
• Kuckuk S., Preclik T., Köstler H.:
  Interactive particle dynamics using OpenCL and Kinect
  In: International Journal of Parallel, Emergent and Distributed Systems 28 (2013), p. 518-536
  ISSN: 1744-5760
  DOI: 10.1080/17445760.2012.745671
  URL: http://www.tandfonline.com/doi/pdf/10.1080/17445760.2012.745671
• Köstler H., Gmeiner B.:
  A Multi-objective Genetic Algorithm for Build Order Optimization in StarCraft II
  In: Künstliche Intelligenz 27 (2013), p. 221-223
  ISSN: 0933-1875
  DOI: 10.1007/s13218-013-0263-2
• Köstler H., Ritter D., Feichtinger C.:
  A Geometric Multigrid Solver on GPU Clusters
  In: GPU Solutions to Multi-scale Problems in Science and Engineering, Berlin Heidelberg: Springer, 2013, p. 407-422 (Lecture Notes in Earth System Sciences)
  ISBN: 978-3-642-16404-0
  DOI: 10.1007/978-3-642-16405-7_26
  URL: http://www.springer.com/computer/theoretical+computer+science/book/978-3-642-16404-0
• Köstler H., Rüde U.:
  The CSE Software Challenge - Covering the Complete Stack
  In: it - Information Technology 55 (2013), p. 91-96
  ISSN: 1611-2776
  URL: http://www.oldenbourg-link.com/toc/itit/55/3?ai=s1&ui=t4i&af=H
• Köstler H., Stürmer M., Pohl T.:
  Performance engineering to achieve real-time high dynamic range imaging
  In: Journal of Real-Time Image Processing (2013), p. 1-13
  ISSN: 1861-8200
  DOI: 10.1007/s11554-012-0312-3
  URL: http://link.springer.com/accesspage/article/10.1007/s11554-012-0312-3?coverImageUrl=/static-content/0.6416/covers/journals/916/11554.jpg
• Wagner A., Bleiler C., Stadelmann V:, Windolf M., Gueorguiev-Rüegg B., Köstler Harald, Boger A., Röhrle O., Ehlers W.:
  Porous media simulation of bone cement spreading during vertebroplasty
  In: Proceedings in Applied Mathematics and Mechanics 13 (2013), p. 67-68
  ISSN: 1617-7061
  URL: http://www.researchgate.net/profile/Harald_Koestler/publication/259541044_Porous-media_simulation_of_bone-cement_spreading_during_vertebroplasty/links/542d602e0cf277d58e8cc1e3.pdf

2012

• Alassi S., Kowarschik M., Pohl T., Köstler H., Rüde U.:
  Estimating Blood Flow Based on 2D Angiographic Image Sequences
  In: Bildverarbeitung für die Medizin 2012, Berlin, Heidelberg: Springer, 2012, p. 380-385
  ISBN: 978-3-642-28502-8
  DOI: 10.1007/978-3-642-28502-8-66
  URL: http://link.springer.com/content/pdf/10.1007/978-3-642-28502-8_66.pdf
• Gmeiner B., Donnert G., Köstler H.:
  Optimizing Opening Strategies in a Real-time Strategy Game by a Multi-objective Genetic Algorithm
  SGAI International Conference on Artificial Intelligence (Cambridge, England, 11. December 2012 - 13. December 2012)
  In: Research and Development in Intelligent Systems XXIX, London: 2012
  DOI: 10.1007/978-1-4471-4739-8-28
  URL: http://www.springer.com/computer/ai/book/978-1-4471-4738-1
• Gmeiner B., Gradl T., Köstler H., Rüde U.:
  Highly Parallel Geometric Multigrid Algorithm for Hierarchical Hybrid Grids
  NIC Symposium 2012 (Jülich, 5. March 2012 - 9. March 2012)
  In: NIC Symposium 2012 - Proceedings, Jülich: 2012
  URL: http://hdl.handle.net/2128/4538
• Gmeiner B., Köstler H., Stürmer M., Rüde U.:
  Parallel multigrid on hierarchical hybrid grids: a performance study on current high performance computing clusters
  In: Concurrency and Computation-Practice & Experience 26 (2012), p. 217-240
  ISSN: 1532-0626
  DOI: 10.1002/cpe.2968
  URL: http://onlinelibrary.wiley.com/doi/10.1002/cpe.2968/pdf
• Götz J., Donath S., Feichtinger C., Iglberger K., Köstler H., Rüde U.:
  waLBerla: Simulation of Complex Flows on Supercomputers
  NIC Symposium 2012 (Jülich, 7. February 2012 - 8. February 2012)
  In: NIC Symposium 2012 - Proceedings, Jülich: 2012
  URL: http://juwel.fz-juelich.de:8080/dspace/handle/2128/4538
• Habich J., Feichtinger C., Köstler H., Hager G., Wellein G.:
  Performance Engineering for the Lattice Boltzmann Method on GPGPUs: Architectural Requirements and Performance Results
  In: Computers & Fluids (2012), p. 10
  ISSN: 0045-7930
  DOI: 10.1016/j.compfluid.2012.02.013.
  URL: http://www.sciencedirect.com/science/article/pii/S0045793012000679
• Membarth R., Hannig F., Teich J., Köstler H.:
  Towards Domain-specific Computing for Stencil Codes in HPC
  2nd International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing (WOLFHPC) (Salt Lake City, UT, 10. November 2012 - 16. November 2012)
  In: Proceedings of the 2nd International Workshop on Domain-Specific Languages and High-Level Frameworks for High Performance Computing (WOLFHPC) 2012
  DOI: 10.1109/SC.Companion.2012.136
• Popa C., Preclik T., Köstler H., Rüde U.:
  On Kaczmarz's projection iteration as a direct solver for linear least squares problems
  In: Linear Algebra and Its Applications 436 (2012), p. 389-404
  ISSN: 0024-3795
  DOI: 10.1016/j.laa.2011.02.017
• Renker LC., Köstler H.:
  Multikulturalität in Studiengängen - Chancen und herausforderungen für die Teamarbeit
  CS 2912,3 (2012), p. 9
  URL: http://www.opus.ub.uni-erlangen.de/opus/volltexte/2012/3430/pdf/report.pdf
  (Techreport)
• Stürmer M., Köstler H., Rüde U.:
  Fast wavelet transform utilizing a multicore-aware framework
  In: Jonasson K (ed.): Applied Parallel and Scientific Computing, Berlin, Heidelberg, New York: Springer-verlag, 2012, p. 313-323 (Lecture Notes in Computer Science, Vol.7134)
  ISBN: 9783642281440
  DOI: 10.1007/978-3-642-28145-7_31
  URL: http://link.springer.com/content/pdf/10.1007%2F978-3-642-28145-7_31.pdf

2011

• Feichtinger C., Donath S., Köstler H., Götz J., Rüde U.:
  WaLBerla: HPC software design for computational engineering simulations
  In: Journal of Computational Science 2 (2011), p. 105-112
  ISSN: 1877-7503
  DOI: 10.1016/j.jocs.2011.01.004
  URL: http://www.sciencedirect.com/science/article/pii/S1877750311000111
• Feichtinger C., Köstler H., Hager G., Rüde U., Wellein G., Habich J.:
  A flexible Patch-based lattice Boltzmann parallelization approach for heterogeneous GPU-CPU clusters
  In: Parallel Computing 37 (2011), p. 536-549
  ISSN: 0167-8191
  DOI: 10.1016/j.parco.2011.03.005
  URL: http://www.sciencedirect.com/science/article/pii/S0167819111000342
• Gmeiner B., Gradl T., Köstler H., Rüde U.:
  Analysis of a flat Highly Parallel Geometric Multigrid Algorithm for Hierarchical Hybrid Grids
  (2011), p. 11
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2011-03.pdf
  (Techreport)
• Röhrle O., Köstler H., Loch M.:
  Segmentation of skeletal muscle fibers for applications in computational skeletal muscle mechanics
  In: Soft Tissues and the Musculoskeletal System, Berlin, Heidelberg, New York: Springer, 2011, p. 107-117 (Computational Biomechanics for Medicine)
  ISBN: 978-1-4419-9618-3
  DOI: 10.1007/978-1-4419-9619-0
  URL: http://link.springer.com/accesspage/chapter/10.1007/978-1-4419-9619-0_12?coverImageUrl=/static/0.6416/sites/link/images/abstract_cover_placeholder.png
• Stürmer M., Köstler H., Rathgeber F.:
  Performance Engineering of an Orthogonal Matching Pursuit Algorithm for Sparse Representation of Signals on Different Architectures
  Second International Workshop on New Frontiers in High-performance and Hardware-aware Computing (San Antonio, Texas, USA)
  In: High-performance and Hardware-aware Computing 2011
  URL: http://digbib.ubka.uni-karlsruhe.de/volltexte/1000021732

2010

• Bartuschat D., Stürmer M., Köstler H.:
  An Orthogonal Matching Pursuit Algorithm for Image Denoising on the Cell Broadband Engine
  8th International Conference, PPAM 2009 (Wroclaw, 13. September 2009 - 16. September 2009)
  In: Parallel Processing and Applied Mathematics, Berlin Heidelberg: 2010
  DOI: 10.1007/978-3-642-14390-8_58
  URL: http://www.springerlink.com/content/JXJ06Q00R1U03516
• Dietrich I., German R., Köstler H., Rüde U.:
  Modeling Multigrid Algorithms for Variational Imaging
  (ASWEC 2010) (Auckland, New Zealand, 6. April 2010 - 9. April 2010)
  In: Proc. of 21st Australian Software Engineering Conference 2010
  DOI: 10.1109/ASWEC.2010.16
• Feichtinger C., Donath S., Köstler H., Götz J., Rüde U.:
  WaLBerla: HPC Software Design for Computational Engineering Simulations
  (2010), p. 16
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2010-03.pdf
  (Techreport)
• Feichtinger C., Habich J., Köstler H., Hager G., Rüde U., Wellein G.:
  A Flexible Patch-Based Lattice Boltzmann Parallelization Approach for Heterogeneous GPU-CPU Clusters
  (2010), p. 18
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2010-07.pdf
  (Techreport)
• Popa C., Preclik T., Köstler H., Rüde U.:
  Some projection-based direct solvers for general linear systems of equations
  (2010), p. 32
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2010-06.pdf
  (Techreport)
• Roman W., Köstler H.:
  A practical framework for the construction of prolongation operators for multigrid based on canonical basis functions
  In: Computing and Visualization in Science 13 (2010), p. 207-220
  ISSN: 1432-9360
  DOI: 10.1007/s00791-010-0138-0
  URL: http://www.springerlink.com/content/cm30372356013201/
• Stürmer M., Köstler H., Rüde U.:
  Optimized fast wavelet transform utilizing a multicore-aware framework for stencil computations
  Para 2010: State of the Art in Scientific and Parallel Computing (Reykjavik, Iceland, 6. June 2010 - 9. June 2010)
  In: Proceedings of Para 2010 2010
  URL: http://vefir.hi.is/para10/extab/para10-paper-93.pdf

2009

• Bartuschat D., Borsdorf A., Köstler H., Rubinstein R., Stürmer M.:
  A parallel K-SVD implementation for CT image denoising
  (2009), p. 26
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2009-01.pdf
  (Techreport)
• Preclik T., Köstler H.:
  Multigrid HowTo: An Open Source Algebraic Multigrid Solver in C`
  (2009), p. 10
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2009-02.pdf
  (Techreport)
• Roman W., Köstler H.:
  On the Construction of Prolongation Operators in Multigrid
  (2009), p. 18
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2009-04.pdf
  (Techreport)
• Stürmer M., Wellein G., Hager G., Köstler H., Rüde U.:
  Challenges and Potentials of Emerging Multicore Architectures
  Third Joint HLRB and KONWIHR Status and Result Workshop (Garching, 3. December 2007 - 4. December 2007)
  In: High Performance Computing in Science and Engineering Garching-Munich 2007, Berlin Heidelberg: 2009
  URL: http://www.springer.com/math/cse/book/978-3-540-69181-5

2008

• Gradl T., Freundl C., Köstler H., Rüde U.:
  Scalable Multigrid
  Third Joint HLRB and KONWIHR Status and Result Workshop (Garching)
  In: High Performance Computing in Science and Engineering Garching-Munich 2007, Berlin Heidelberg: 2008
  URL: http://link.springer.com/chapter/10.1007/978-3-540-69182-2_38
• Han J., Köstler H., Bennewitz C., Kuwert T., Hornegger J.:
  Computer-aided evaluation of anatomical accuracy of image fusion between X-ray CT and SPECT
  In: Computerized Medical Imaging and Graphics 32 (2008), p. 388-395
  ISSN: 0895-6111
  DOI: 10.1016/j.compmedimag.2008.03.002
• Köstler H.:
  A Multigrid Framework for Variational Approaches in Medical Image Processing and Computer Vision
  München: Dr. Hut Verlag, 2008
  ISBN: 978-3-89963-761-8
• Köstler, Harald:
  A Multigrid Framework for Variational Approaches in Medical Image Processing and Computer Vision (Dissertation, 2008)
  URL: https://www10.cs.fau.de/publications/dissertations/Diss_2008-Koestler.pdf
• Köstler H.:
  Multigrid HowTo: A simple Multigrid solver in C++ in less than 200 lines of code
  (2008), p. 18
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2008-03.pdf
  (Techreport)
• Köstler H., Popa C., Prümmer M., Rüde U.:
  Algebraic Full Multigrid in Image Reconstruction
  5th Workshop on Mathematical Modellingof Environmental and Life Sciences Problems (Constanta, Romania, 10. September 2006 - 13. September 2006)
  In: Stelian I, Marinoschi G, Popa C (ed.): Series on Mathematical Modelling of Environmental and Life Sciences, Proceedings of the fifth workshop, September, 2006, Constanta, Romania, Bukarest: 2008
  Open Access: https://www10.cs.fau.de/publications/papers/2008/KoestlPopaPruemmRuede08.pdf
  URL: https://www10.cs.fau.de/publications/papers/2008/KoestlPopaPruemmRuede08.pdf
• Köstler H., Ruhnau K., Roman W.:
  Multigrid solution of the optical flow system using a combined diffusion- and curvature-based regularizer
  In: Numerical Linear Algebra With Applications 15 (2008), p. 201-218
  ISSN: 1070-5325
  DOI: 10.1002/nla.576
  URL: http://onlinelibrary.wiley.com/doi/10.1002/nla.576/pdf
• Köstler H., Schmid R., Rüde U., Scheit C.:
  A parallel multigrid accelerated Poisson solver for ab initio molecular dynamics application
  In: Computing and Visualization in Science 11 (2008), p. 115-122
  ISSN: 1432-9360
  DOI: 10.1007/s00791-007-0062-0
  URL: http://link.springer.com/article/10.1007/s00791-007-0062-0
• Stürmer M., Köstler H., Rüde U.:
  A fast full multigrid solver for applications in image processing
  In: Numerical Linear Algebra With Applications 15 (2008), p. 187-200
  ISSN: 1070-5325
  DOI: 10.1002/nla.563
  URL: http://onlinelibrary.wiley.com/doi/10.1002/nla.703/pdf
• Stürmer M., Ritter D., Köstler H., Rüde U.:
  Experiences with Numerical Codes on the Cell Broadband Engine Architecture
  International Workshop on New Frontiers in High-performance and Hardware-aware Computing (HipHaC’08) (Lake Como, Italy, 8. November 2008 - 8. November 2008)
  In: Buchty R, Weiß J-P (ed.): High-performance and hardware-aware computing: proceedings of the first International Workshop on New Frontiers in High-performance and Hardware-aware Computing (HipHaC’08), Karlsruhe: 2008
  DOI: 10.5445/KSP/1000009529
  URL: http://www.ksp.kit.edu/9783866442986

2007

• Kalmoun EM., Köstler H., Rüde U.:
  3D optical flow computation using a parallel variational multigrid scheme with application to cardiac C-arm CT motion
  In: Image and Vision Computing 25 (2007), p. 1482-1494
  ISSN: 0262-8856
  DOI: 10.1016/j.imavis.2006.12.017
  URL: http://www.sciencedirect.com/science/article/pii/S0262885606003696
• Wolters Carsten, Köstler Harald, Möller Christian, Härdtlein Jochen, Grasedyck Lars, Hackbusch Wolfgang:
  Numerical Mathematics of the Subtraction Method for the Modeling of a Current Dipole in EEG Source Reconstruction Using Finite Element Head Models
  In: SIAM Journal on Scientific Computing 30 (2007), p. 24-45
  ISSN: 1064-8275
  DOI: 10.1137/060659053
  URL: http://epubs.siam.org/sisc/resource/1/sjoce3/v30/i1
• Köstler H., Münch P.:
  Videocoding using a variational approach for decompression
  (2007), p. 10
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2007-01.pdf
  (Techreport)
• Köstler H., Ruhnau K., Roman W.:
  Multigrid solution of the optical flow system using a combined diffusion and curvature based regularizer
  (2007), p. 16
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2007-07.pdf
  (Techreport)
• Köstler H., Stürmer M., Freundl C., Rüde U.:
  PDE based Video Compression in Real Time
  (2007), p. 14
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2007-11.pdf
  (Techreport)
• Mayer MA., Borsdorf A., Köstler H., Hornegger J., Rüde U.:
  Nonlinear Diffusion Noise Reduction in CT Using Correlation Analysis
  3rd Russian-Bavarian Conference on Biomedical Engineering (Erlangen, 2. July 2007 - 3. July 2007)
  In: Hornegger Joachim, Mayr Ernst W., Schookin Sergey, Feußner Hubertus, Navab Nassir, Gulyaev Yuri V., Höller Kurt, Ganzha Victor (ed.): 3rd Russian-Bavarian Conference on Biomedical Engineering, Erlangen: 2007
  URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2007/Mayer07-NDN.pdf
• Mayer MA., Borsdorf A., Köstler H., Hornegger J., Rüde U.:
  Nonlinear Diffusion vs. Wavelet Based Noise Reduction in CT Using Correlation Analysis
  Vision, Modelling, and Visualisation 2007 (Saarbrücken, 7. November 2007 - 9. November 2007)
  In: Lensch H.P.A., Rosenhahn B., Seidel H.-P., Slusallek P., Weickert J. (ed.): Vision, Modelling, and Visualisation 2007, Saarbrücken: 2007
  URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2007/Mayer07-NDV.pdf
• Stürmer M., Köstler H., Rüde U.:
  A fast full multigrid solver for applications in image processing
  (2007), p. 14
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2007-06.pdf
  (Techreport)
• Wolters C., Köstler H., Möller C., Härdtlein J., Anwander A.:
  Numerical approaches for dipole modeling in finite element method based source analysis
  15th International Conference on Biomagnetism (Vancouver, Canada)
  In: New Frontiers in Biomagnetism, ICS 1300, Amsterdam: 2007
  DOI: 10.1016/j.ics.2007.02.014

2006

• Freundl C., Köstler H., Rüde U.:
  Teaching the Foundations of Computational Science on the Undergraduate Level
  ICCS 2006 : "Advancing Science through Computation" (Reading, UK, 28. May 2006 - 31. May 2006)
  In: Computational Science - ICCS 2006: 6th International Conference, Reading, UK, May 28-31, 2006. Proceedings, Part II, Berlin-Heidelberg: 2006
  DOI: 10.1007/11758525_25
  URL: http://link.springer.com/content/pdf/10.1007/11758525_25.pdf
• Hornegger J., Köstler H., Rüde U., Prümmer M.:
  Adaptive variational sinogram interpolation of sparsely sampled CT data
  18th International Conference on Pattern Recognition, ICPR 2006 (Hong Kong, 20. August 2006 - 24. August 2006)
  In: Proceedings of the ICPR 2006 2006
  DOI: 10.1109/ICPR.2006.225
• Köstler H., Möller C., Deserno F.:
  Performance Results for Optical Flow on an Opteron Cluster Using a Parallel 2D/3D Multigrid Solver
  (2006), p. 27
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2006-05.pdf
  (Techreport)
• Köstler H., Popa C., Prümmer M., Rüde U.:
  Towards an Algebraic Multigrid Method for Tomographic Image Reconstruction - Improving Convergence of ART
  European Conference on Computational Fluid Dynamics (Egmond aan Zee, NL)
  In: ECCOMAS CFD 06 2006
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2006/Koestler_ECCOMAS-CFD_06
• Köstler H., Popa C., Rüde U.:
  Algebraic multigrid for general inconsistent linear systems: The correction step
  (2006), p. 10
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2006-04.pdf
  (Techreport)
• Köstler H., Rüde U.:
  An accurate multigrid solver for computing singular solutions of elliptic problems
  In: Numerical Linear Algebra With Applications 13 (2006), p. 231-249
  ISSN: 1070-5325
  DOI: 10.1002/nla.478
  URL: http://dl.acm.org/ft_gateway.cfm?id=1218086&ftid=390490&coll=DL&dl=ACM&CFID=610112035&CFTOKEN=94651414
• Köstler H., Thürey N., Rüde U., Zheng Y.:
  Enhanced Motion Blur Calculation with Optical Flow
  Vision, Modeling and Visualization (Aachen)
  In: Proceedings of Vision, Modeling and Visualization 2006, Aachen: 2006
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2006/Zheng_VMV06.pdf
• Schmid R., Tafipolsky M., König PH., Köstler H.:
  Car-Parrinello molecular dynamics using real space waverfunctions
  In: physica status solidi (b) 243, Issue 5 (2006), p. 1001-1015
  ISSN: 0370-1972
  URL: http://onlinelibrary.wiley.com/doi/10.1002/pssb.200541391/pdf

2005

• Christadler I., Köstler H., Rüde U.:
  Robust and efficient multigrid techniques for the optical flow problem using different regularizers
  18th Symposium Simulationstechnique ASIM 2005 (Erlangen)
  In: 18th Symposium Simulationstechnique ASIM 2005 Proceedings, Erlangen: 2005
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2005/Koestler_ASIM05.pdf
• Fabricius U., Freundl C., Köstler H., Rüde U.:
  High Performance Computing Education for Students in Computational Engineering
  Fifth International Conference on Computational Science (Atlanta, 22. May 2005 - 25. May 2005)
  In: Computational Science - ICCS 2005, Berlin/Heidelberg/New York: 2005
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2005/Fabricius_ICCS05.pdf
• Fabricius U., Freundl C., Köstler H., Rüde U.:
  High Performance Computing Education for Students in Computational Engineering
  In: Lecture Notes in Computer Science 3515 (2005), p. 27-35
  ISSN: 0302-9743
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2005-01.pdf
  (Techreport)
• Freundl C., Köstler H.:
  Using ParExPDE for the numerical solution of bioelectric field problems
  18th Symposium Simulationstechnique ASIM 2005 (Erlangen)
  In: 18th Symposium Simulationstechnique ASIM 2005 Proceedings, Erlangen: 2005
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2005/Freundl_ASIM05.pdf
• Köstler H.:
  An accurate multigrid solver for computing singular solutions of elliptic problems
  12th Copper Mountain Conference on Multigrid Method (Copper Mountain)
  In: Abstracts Of the 12th Copper Mountain Conference on Multigrid Methods 2005
  URL: https://www10.informatik.uni-erlangen.de/Publications/Papers/2005/Koestler_MG05.pdf
• Köstler H., Christadler I., Rüde U.:
  Robust and efficient multigrid techniques for the optical flow problem using different regularizers
  (2005), p. 6
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2005-06.pdf
  (Techreport)
• Prümmer M., Köstler H., Hornegger J., Rüde U.:
  A full multigrid technique to accelerate an ART scheme for tomographic image reconstruction
  Simulationstechnique 18th Symposium in Erlangen 2005 (Erlangen, 12. September 2005 - 15. September 2005)
  In: Hülsemann Frank, Kowarschik Markus, Rüde Ulrich (ed.): Frontiers in Simulation, Erlangen: 2005
  Open Access: https://www10.cs.fau.de/publications/papers/2005/Pruemmer_Koestler_ASIM05.pdf
  URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2005/Pruemmer05-AFM.pdf

2004

• Kalmoun EM., Köstler H., Rüde U.:
  Parallel multigrid computation of the 3D optical flow
  (2004), p. 9
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2004-04.pdf
  (Techreport)
• Köstler H., Rüde U.:
  Accurate Techniques for Computing Singular Solutions of Elliptic Problems
  (2004), p. 24
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2004-03.pdf
  (Techreport)
• Köstler H., Rüde U.:
  Extrapolation Techniques for Computing Accurate Solutions of Elliptic Problems with Singular Solutions
  International Conference on Computational Science (Krakau)
  In: Computational Science - ICCS 2004, Berlin: 2004
• Schmid Rochus, Köstler Harald, Rüde Ulrich:
  Multigrid Accelerated Poisson-Solver for ab initio Moleculardynamic Applications
  (2004), p. 10
  URL: https://www10.cs.fau.de/publications/reports/TechRep_2004-05.pdf
  (Techreport)